HIV Env BG505_MD39_B11 SOSIP boosting trimer in complex with B11_d77.7 mouse Fab and RM20A3 Fab
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8f92
Q-score: 0.516
Xie Z, Lin YC, Steichen JM, Ozorowski G, Kratochvil S, Ray R, Torres JL, Liguori A, Kalyuzhniy O, Wang X, Warner JE, Weldon SR, Dale GA, Kirsch KH, Nair U, Baboo S, Georgeson E, Adachi Y, Kubitz M, Jackson AM, Richey ST, Volk RM, Lee JH, Diedrich JK, Prum T, Falcone S, Himansu S, Carfi A, Yates JR, Paulson JC, Sok D, Ward AB, Schief WR, Batista FD
Science (2024) [ DOI: doi:10.1126/science.adk0582 ]
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
- B11_d77.7 fab heavy chain (14 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv-1 env bg505_md39_b11 sosip in complex with fabs b11_d77.7 and rm20a3 (Complex)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)
- B11_d77.7 fab kappa light chain (11 kDa, Protein from Mus musculus)
- Bg505_md39_b11 gp120 (54 kDa, Protein from Human immunodeficiency virus)
- Bg505_md39_b11 gp41 (18 kDa, Protein from Human immunodeficiency virus)
HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vfv
Q-score: 0.495
Xie Z, Lin YC, Steichen JM, Ozorowski G, Kratochvil S, Ray R, Torres JL, Liguori A, Kalyuzhniy O, Wang X, Warner JE, Weldon SR, Dale GA, Kirsch KH, Nair U, Baboo S, Georgeson E, Adachi Y, Kubitz M, Jackson AM, Richey ST, Volk RM, Lee JH, Diedrich JK, Prum T, Falcone S, Himansu S, Carfi A, Yates JR, Paulson JC, Sok D, Ward AB, Schief WR, Batista FD
Science (2024) [ DOI: doi:10.1126/science.adk0582 ]
- B16_d77.5 mouse fab heavy chain fv (13 kDa, Protein from Mus musculus)
- Iv env bg505_md39_b16 sosip boosting trimer in complex with b16_d77.5 mouse fab and rm20a3 fab (Complex from Human immunodeficiency virus 1)
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
- B16_d77.5 mouse fab light chain fv (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)
- Envelope glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
Science (2024) [ DOI: doi:10.1126/science.adj8321 ]
- Md64 n332-gt5 sosip gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Md64 n332-gt5 sosip (Complex from Human immunodeficiency virus 1)
- Md64 n332-gt5 sosip gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
E. coli DNA gyrase bound to a DNA crossover
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8qdx
Q-score: 0.451
Vayssieres M, Marechal N, Yun L, Lopez Duran B, Murugasamy NK, Fogg JM, Zechiedrich L, Nadal M, Lamour V
Science (2024) 384 pp. 227-232 [ DOI: doi:10.1126/science.adl5899 Pubmed: 38603484 ]
- Dsdna minicircles (Complex from synthetic construct)
- Dna gyrase subunit b (90 kDa, Protein from Escherichia coli)
- Dna gyrase subunit a (97 kDa, Protein from Escherichia coli)
- Dna minicircle (36 kDa, DNA from synthetic construct)
- E. coli dna gyrase (Complex from Escherichia coli)
- Dna minicircle (35 kDa, DNA from synthetic construct)
- E. coli dna gyrase in complex with dna minicircles (745 kDa, Complex)
E. coli DNA gyrase bound to a linear part of a DNA minicircle
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8qqs
Q-score: 0.519
Vayssieres M, Marechal N, Yun L, Lopez Duran B, Murugasamy NK, Fogg JM, Zechiedrich L, Nadal M, Lamour V
Science (2024) 384 pp. 227-232 [ DOI: doi:10.1126/science.adl5899 Pubmed: 38603484 ]
- Dsdna minicircles (Complex from synthetic construct)
- Dna (30-mer) (9 kDa, DNA from synthetic construct)
- Dna gyrase subunit b (90 kDa, Protein from Escherichia coli)
- Dna gyrase subunit a (97 kDa, Protein from Escherichia coli)
- Dna (30-mer) (9 kDa, DNA from synthetic construct)
- E. coli dna gyrase (Complex from Escherichia coli)
- E. coli dna gyrase in complex with dsdna minicircles (745 kDa, Complex)
Asymetric subunit of E. coli DNA gyrase bound to a linear part of a DNA minicircle
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8qqu
Q-score: 0.542
Vayssieres M, Marechal N, Yun L, Lopez Duran B, Murugasamy NK, Fogg JM, Zechiedrich L, Nadal M, Lamour V
Science (2024) 384 pp. 227-232 [ DOI: doi:10.1126/science.adl5899 Pubmed: 38603484 ]
- Dsdna minicircles (Complex from synthetic construct)
- Dna gyrase subunit b (90 kDa, Protein from Escherichia coli)
- Dna gyrase subunit a (97 kDa, Protein from Escherichia coli)
- Dna (16-mer) (4 kDa, DNA from synthetic construct)
- E. coli dna gyrase (Complex from Escherichia coli)
- Dna (16-mer) (4 kDa, DNA from synthetic construct)
- E. coli dna gyrase in complex with dsdna minicircles (745 kDa, Complex)
Cryo-EM reconstruction of the formin Cdc12 bound to the barbed end of F-actin (without phalloidin)
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) 384 pp. eadn9560-eadn9560 [ Pubmed: 38603491 DOI: doi:10.1126/science.adn9560 ]
- Dimeric fh2 domain of s. pombe cdc12 (Complex from Schizosaccharomyces pombe)
- Complex of the dimeric fh2 domain of s. pombe cdc12 bound to the barbed end of f-actin. (Complex from Homo sapiens)
- Human cytoplasmic beta-actin (Protein from Homo sapiens)
- Actin filament (Complex)
- S. pombe cdc12 (Protein from Schizosaccharomyces pombe)
Resolution: 6.25 Å
EM Method: Single-particle
Fitted PDBs: 8rty
Q-score: 0.169
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) 384 pp. eadn9560-eadn9560 [ Pubmed: 38603491 DOI: doi:10.1126/science.adn9560 ]
- Actin-formin-profilin ring complex: the phalloidin-stabilized f-actin barbed end bound by dimeric-cdc12 and profilin-s71m. (Complex)
- Profilin-1-s29c/s71m (Complex from Homo sapiens)
- Phalloidin (Complex from Amanita phalloides)
- Magnesium ion (24 Da, Ligand)
- Dimeric fh1fh2 domain of s. pombe cdc12 (Complex from Schizosaccharomyces pombe)
- Actin, cytoplasmic 1, n-terminally processed (41 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Profilin-1 (15 kDa, Protein from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
- Actin filament (Complex from Homo sapiens)
- Methylated-dna--protein-cysteine methyltransferase,cell division control protein 12 (77 kDa, Protein from Schizosaccharomyces pombe)
- Phalloidin (amanita phalloides) (808 Da, Protein from Amanita phalloides)
Structure of the undecorated barbed end of F-actin.
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8ru0
Q-score: 0.542
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) 384 pp. eadn9560-eadn9560 [ Pubmed: 38603491 DOI: doi:10.1126/science.adn9560 ]
- Complex of the actin subunits that form the barbed end of actin filaments. (Complex from Oryctolagus cuniculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin filament (Complex)
- Phosphate ion (94 Da, Ligand)
Structure of the F-actin barbed end bound by formin mDia1
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8ru2
Q-score: 0.362
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) 384 pp. eadn9560-eadn9560 [ Pubmed: 38603491 DOI: doi:10.1126/science.adn9560 ]
- Mouse mdia1 (fh1fh2c domain) (Complex from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Actin, cytoplasmic 1, n-terminally processed (41 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Mdia1-bound f-actin barbed end. (Complex)
- Actin filament (Complex from Homo sapiens)
- Methylated-dna--protein-cysteine methyltransferase,protein diaphanous homolog 1 (86 kDa, Protein from Mus musculus)